Abstract: FR-PO1110
Plasma Transcriptome Profile Associated with CKD Progression
Session Information
- CKD: Epidemiology, Risk Factors, and Prevention - 2
October 25, 2024 | Location: Exhibit Hall, Convention Center
Abstract Time: 10:00 AM - 12:00 PM
Category: CKD (Non-Dialysis)
- 2301 CKD (Non-Dialysis): Epidemiology, Risk Factors, and Prevention
Authors
- Srivastava, Anvesha, The George Washington University, Washington, District of Columbia, United States
- Maienschein-Cline, Mark, University of Illinois System, Urbana, Illinois, United States
- Amdur, Richard L., Northwell Health Feinstein Institutes for Medical Research, Manhasset, New York, United States
- Pabalan, Ana, The George Washington University, Washington, District of Columbia, United States
- Parekh, Vaishali I., The George Washington University, Washington, District of Columbia, United States
- Raj, Dominic S., The George Washington University, Washington, District of Columbia, United States
Background
Understanding the molecular signals associated with the progression of kidney disease is vital for risk stratification and targeted treatment. Advances in RNA-sequencing technology has enabled us to translate extracellular transcriptome profiles to precision diagnostics.
Methods
We evaluated the plasma mRNA profile of participants exhibiting slow (n=119) and fast (n=119) decline in estimated glomerular filtration rate (eGFR) among the Chronic Renal Insufficiency Cohort (CRIC) in a nested case control study. The two groups were matched for age, sex, race, baseline eGFR, proteinuria and diabetes status. The next generation sequencing data was analyzed edgeR to identify differentially expressed genes (DEGs) and associated pathways. We also compared the top plasma DEGs with gene expression in microdissected human CKD kidney.
Results
We identified fragments from ~28,000 annotated genes, of which 783 transcripts exhibited differential expression between slow and fast CKD progressors. Among 629 protein coding genes, 469 were overexpressed in slow progressors, while 157 showed increased expression in fast progressors. Expression of GLI2, CUX1, NOTCH1 and LRP1 transcripts were amplified in slow progressors. Pathway analysis linked these differentially expressed genes to WNT/β-catenin signaling, IL-12 signaling and production in macrophages, Netrin-1 Signaling and Epithelial-Mesenchymal Transition pathways. Many of the plasma differentially expressed genes were also upregulated in human CKD kidney. A risk score containing transcripts GABA, NEUROG and SHISAL2B was able to predict fast progressors (ROC 0.85 [95% CI= 0.75-0.95]).
Conclusion
Warranting further validation, circulating levels of aberrantly expressed transcripts hold potential to be used as biomarkers for fast CKD progression.
Funding
- NIDDK Support